Research workbench
Refined solution structure of the tyr 41--> his mutant of the M13 gene V protein. a comparison with the crystal structure
Analyse Refined solution structure of the tyr 41--> his mutant of the M13 gene V… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2GVB
- Type
- protein
- Length
- 174 residues
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Gene V protein
- UniProt
- P69544
- Pockets
- 3 · best druggability 0.51
Structure
solution nmr · 1 distinct chain · 7% helix, 44% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Gene V protein | protein | 87 | 7% helix, 44% strand | P69544 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 241 | 0.51 | 0.75 | 31 | empty |
| 2 | 76 | 0.45 | 0.81 | 15 | empty |
| 3 | 57 | 0.28 | 0.75 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 844 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 2GVB · Refined solution structure of the tyr 41--> his mutant of the M13 gene V protein. a… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P69544
- Elsewhere: RCSB PDB 2GVB · PDBe 2GVB · UniProt P69544
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