Research workbench
Three dimensional structure of the protein P54332 from bacillus subtilis. northeast structural genomics consortium target SR353.
Analyse Three dimensional structure of the protein P54332 from bacillus subtilis.… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2GUJ
- Type
- protein
- Length
- 270 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phage-like element pbsx protein xkdm
- UniProt
- P54332
- Pockets
- 1 · best druggability 0.53
Structure
x-ray diffraction · 2 distinct chains · 16% helix, 37% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phage-like element pbsx protein xkdm | protein | 133 | 16% helix, 37% strand | P54332 |
| B | Phage-like element pbsx protein xkdm | protein | 137 | 15% helix, 37% strand | P54332 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 349 | 0.53 | 0.74 | 35 | empty |
Interfaces
1 interface between chains.
- A–B · 123 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 10 modified (engineered).
Compared structures
- 2GUJ · Three dimensional structure of the protein P54332 from Bacillus Subtilis. Northeast… · the same entry in another collection · chain A against A, TM-score 1.00
- P54332 · AlphaFold monomer V2.0 prediction for phage-like element pbsx protein xkdm (P54332) · a predicted model of the same protein · chain A against A, TM-score 0.58
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P54332
- Elsewhere: RCSB PDB 2GUJ · PDBe 2GUJ · UniProt P54332
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