Research workbench
Crystal structure of a zinc containing peptidase from vibrio cholerae
Analyse Crystal structure of a zinc containing peptidase from vibrio cholerae in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2GU1
- Type
- protein
- Length
- 324 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Zinc peptidase
- EC
- 3.4.-.-
- UniProt
- Q9KUL5
- Ligands
- ZN, NA
- Pockets
- 3 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 14% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Zinc peptidase (EC 3.4.-.-) | protein | 324 | 14% helix, 41% strand | Q9KUL5 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 974 | 0.73 | 0.77 | 99 | empty |
| 2 | 51 | 0.47 | 0.85 | 23 | empty |
| 3 | 58 | 0.31 | 0.76 | 14 | empty |
Compared structures
- 2GU1 · Crystal structure of a zinc containing peptidase from vibrio cholerae · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9KUL5
- Elsewhere: RCSB PDB 2GU1 · PDBe 2GU1 · UniProt Q9KUL5
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