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Crystal structure of human rotavirus NSP2 (group C / bristol strain)
Analyse Crystal structure of human rotavirus NSP2 (group C / bristol strain) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2GU0
- Type
- protein
- Length
- 602 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nonstructural protein 2
- UniProt
- Q9PY93
- Pockets
- 5 · best druggability 0.59
Structure
x-ray diffraction · 1 distinct chain · 47% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Nonstructural protein 2 | protein | 301 | 47% helix, 16% strand | Q9PY93 |
Pockets
5 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 355 | 0.59 | 0.76 | 45 | empty |
| 2 | 345 | 0.56 | 0.75 | 32 | empty |
| 3 | 132 | 0.54 | 0.82 | 22 | empty |
| 4 | 142 | 0.54 | 0.81 | 26 | empty |
| 5 | 52 | 0.26 | 0.74 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 120 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 2GU0 · Crystal Structure of Human Rotavirus NSP2 (Group C / Bristol Strain) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9PY93
- Elsewhere: RCSB PDB 2GU0 · PDBe 2GU0 · UniProt Q9PY93
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