Research workbench
Human chromodomain Y-like protein
Analyse Human chromodomain Y-like protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2GTR
- Type
- protein
- Length
- 766 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Chromodomain Y-like protein
- UniProt
- Q9Y232
- Pockets
- 6 · best druggability 0.82
Structure
x-ray diffraction · 3 distinct chains · 53% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Chromodomain Y-like protein | protein | 258 | 54% helix, 16% strand | Q9Y232 |
| B | Chromodomain Y-like protein | protein | 258 | 53% helix, 16% strand | Q9Y232 |
| C | Chromodomain Y-like protein | protein | 250 | 52% helix, 16% strand | Q9Y232 |
Pockets
6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 369 | 0.82 | 0.91 | 57 | empty |
| 2 | 293 | 0.61 | 0.79 | 46 | empty |
| 3 | 268 | 0.56 | 0.77 | 46 | empty |
| 4 | 100 | 0.44 | 0.78 | 24 | empty |
| 5 | 103 | 0.41 | 0.77 | 23 | empty |
Interfaces
3 interfaces between chains.
- A–B · 1114 Ų buried · 8 hydrogen bonds · protein-protein
- A–C · 1066 Ų buried · 7 hydrogen bonds · protein-protein
- B–C · 1059 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Y232
- Elsewhere: RCSB PDB 2GTR · PDBe 2GTR · UniProt Q9Y232
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.