Research workbench
The crystal structure of B-ketoacyl-acp synthase II (fabf) from staphylococcus aureus
Analyse The crystal structure of B-ketoacyl-acp synthase II (fabf) from staphylococcus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2GQD
- Type
- protein
- Length
- 822 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 3-oxoacyl-[acyl-carrier-protein] synthase 2
- EC
- 2.3.1.41
- UniProt
- Q8NXE1
- Pockets
- 9 · best druggability 0.69
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | 3-oxoacyl-[acyl-carrier-protein] synthase 2 (EC 2.3.1.41) | protein | 411 | 39% helix, 21% strand | Q8NXE1 |
Pockets
9 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 208 | 0.69 | 0.86 | 40 | empty |
| 2 | 171 | 0.67 | 0.87 | 41 | empty |
| 3 | 143 | 0.44 | 0.76 | 27 | empty |
| 4 | 156 | 0.43 | 0.75 | 31 | empty |
| 5 | 85 | 0.41 | 0.78 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 2873 Ų buried · 21 hydrogen bonds · protein-protein
Compared structures
- 2GQD · The crystal structure of B-ketoacyl-ACP synthase II (FabF) from Staphylococcus aureus · the same entry in another collection · chain A against A, TM-score 1.00
- Q8NXE1 · AlphaFold monomer V2.0 prediction for 3-oxoacyl-[acyl-carrier- protein] synthase 2… · a predicted model of the same protein · chain B against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8NXE1
- Elsewhere: RCSB PDB 2GQD · PDBe 2GQD · UniProt Q8NXE1
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