Research workbench
2'-me-se and br derivitation of a-DNA octamer G(UMS)G(BRU) acac
Analyse 2'-me-se and br derivitation of a-DNA octamer G(UMS)G(BRU) acac in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2GPX
- Type
- DNA
- Length
- 8 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-D(*GP*(UMS)P*GP*(BRU)P*AP*CP*AP*C)-3'
- Ligands
- BA
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 5'-D(*GP*(UMS)P*GP*(BRU)P*AP*CP*AP*C)-3' | dna | 8 | — | — |
Ligands and binding sites
- BA · Barium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 2 modified (nucleotide modification).
Compared structures
- 2GPX · 2'-Me-Se and Br Derivitation of A-DNA Octamer G(UMS)G(BRU)ACAC · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2GPX · PDBe 2GPX
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