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Solution structure of [D(GTATATAC)]2 via restrained molecular dynamics simulations with nuclear magnetic resonance constraints derived from relaxation matrix analysis of two-dimensional nuclear overhauser effect experiments

Analyse Solution structure of [D(GTATATAC)]2 via restrained molecular dynamics… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1D42
Type: DNA
Length: 16 nucleotides
Chains: 2
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: DNA (5'-D(*GP*TP*AP*TP*AP*TP*AP*C)-3')

Structure

solution nmr · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	DNA (5'-D(GPTPAPTPAPTPAPC)-3')	dna	8	—	—

Interfaces

1 interface between chains.

A–B · 328 Å² buried · 34 hydrogen bonds · nucleic-nucleic

Compared structures

1D42 · Solution structure of [D(GTATATAC)]2 via restrained molecular dynamics simulations with… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 1D42 · PDBe 1D42

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