Research workbench
Crystal structure of D(GCGAACGC): two types of bulge- containing duplexes
Analyse Crystal structure of D(GCGAACGC): two types of bulge- containing duplexes in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2GOT
- Type
- DNA
- Length
- 16 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*DGP*(CBR)P*DGP*DAP*DAP*DCP*DGP*DC)- 3')
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | DNA (5'-D(*DGP*(CBR)P*DGP*DAP*DAP*DCP*DGP*DC)- 3') | dna | 8 | — | — |
Interfaces
1 interface between chains.
- A–B · 103 Ų buried · 5 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 2 modified (nucleotide modification).
Compared structures
- 2GOT · Crystal structure of d(GCGAACGC): two types of bulge-containing duplexes · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2GOT · PDBe 2GOT
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.