Research workbench
Crystal structure of protein EF0006 from enterococcus faecalis
Analyse Crystal structure of protein EF0006 from enterococcus faecalis in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2GMQ
- Type
- protein
- Length
- 198 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein EF0006
- UniProt
- Q82YS4
- Pockets
- 1 · best druggability 0.27
Structure
x-ray diffraction · 2 distinct chains · 30% helix, 40% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein EF0006 | protein | 99 | 30% helix, 40% strand | Q82YS4 |
| B | Hypothetical protein EF0006 | protein | 99 | 30% helix, 40% strand | Q82YS4 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 73 | 0.27 | 0.72 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 303 Ų buried · 4 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 modified (engineered).
Compared structures
- 2GMQ · Crystal structure of protein EF0006 from Enterococcus faecalis · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q82YS4
- Elsewhere: RCSB PDB 2GMQ · PDBe 2GMQ · UniProt Q82YS4
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