Research workbench

Protein of unknown function NMB0488 from neisseria meningitidis

Analyse Protein of unknown function NMB0488 from neisseria meningitidis in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2GKP
Type: protein
Length: 164 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hypothetical protein NMB0488
UniProt: Q9K0T5
Ligands: NA
Pockets: 1 · best druggability 0.56

Structure

x-ray diffraction · 1 distinct chain · 35% helix, 30% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Hypothetical protein NMB0488	protein	164	35% helix, 30% strand	Q9K0T5

Ligands and binding sites

NA · Sodium ion · metal · chains A
EDO · 1,2-ethanediol · additive · chains A
BME · Beta-mercaptoethanol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	256	0.56	0.77	37	NA, EDO

Modifications

Observed in the structure: 3 modified, 1 covalent (engineered, additive adduct).

Compared structures

2GKP · Protein of Unknown Function NMB0488 from Neisseria meningitidis · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9K0T5
Elsewhere: RCSB PDB 2GKP · PDBe 2GKP · UniProt Q9K0T5

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