Research workbench
Crystal structure of a pilz-containing protein (PP4397) from pseudomonas putida KT2440 at 2.25 a resolution
Analyse Crystal structure of a pilz-containing protein (PP4397) from pseudomonas putida… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2GJG
- Type
- protein
- Length
- 247 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein PP4397
- UniProt
- Q88EQ6
- Pockets
- 2 · best druggability 0.56
Structure
x-ray diffraction · 1 distinct chain · 23% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein PP4397 | protein | 247 | 23% helix, 41% strand | Q88EQ6 |
Ligands and binding sites
- EDO · 1,2-ethanediol · additive · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 283 | 0.56 | 0.76 | 34 | EDO |
| 2 | 69 | 0.43 | 0.81 | 26 | EDO |
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 2GJG · Crystal structure of a pilz-containing protein (PP4397) from pseudomonas putida KT2440 at… · the same entry in another collection · chain A against A, TM-score 1.00
- Q88EQ6 · AlphaFold monomer V2.0 prediction for flagellar brake protein ycgr (Q88EQ6) · a predicted model of the same protein · chain A against A, TM-score 0.52
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q88EQ6
- Elsewhere: RCSB PDB 2GJG · PDBe 2GJG · UniProt Q88EQ6
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