Research workbench
Signal recognition particle receptor beta-subunit in nucleotide-free dimerized form
Analyse Signal recognition particle receptor beta-subunit in nucleotide-free dimerized… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2GED
- Type
- protein
- Length
- 333 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Signal recognition particle receptor beta subunit
- UniProt
- P36057
- Ligands
- SO4
- Pockets
- 3 · best druggability 0.49
Structure
x-ray diffraction · 2 distinct chains · 42% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Signal recognition particle receptor beta subunit | protein | 170 | 42% helix, 19% strand | P36057 |
| B | Signal recognition particle receptor beta subunit | protein | 163 | 42% helix, 20% strand | P36057 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 6 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 203 | 0.49 | 0.75 | 25 | empty |
| 2 | 63 | 0.47 | 0.84 | 22 | empty |
| 3 | 61 | 0.40 | 0.81 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 1598 Ų buried · 26 hydrogen bonds · protein-protein
Compared structures
- 2GED · Signal Recognition Particle Receptor Beta-Subunit in nucleotide-free dimerized form · the same entry in another collection · chain A against A, TM-score 1.00
- P36057 · AlphaFold monomer V2.0 prediction for signal recognition particle receptor subunit beta… · a predicted model of the same protein · chain B against A, TM-score 0.61
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P36057
- Elsewhere: RCSB PDB 2GED · PDBe 2GED · UniProt P36057
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.