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Structure of the N-terminal domain of avian infectious bronchitis virus nucleocapsid protein (strain gray) in a novel dimeric arrangement

Analyse Structure of the N-terminal domain of avian infectious bronchitis virus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2GEC
Type: protein
Length: 277 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Nucleocapsid protein
UniProt: P32923
Pockets: 3 · best druggability 0.71

Structure

x-ray diffraction · 2 distinct chains · 2% helix, 26% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Nucleocapsid protein	protein	138	2% helix, 26% strand	P32923
B	Nucleocapsid protein	protein	139	2% helix, 26% strand	P32923

Pockets

3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	388	0.71	0.82	45	empty
2	261	0.52	0.76	40	empty
3	195	0.50	0.77	24	empty

Interfaces

1 interface between chains.

A–B · 1130 Å² buried · 17 hydrogen bonds · protein-protein

Compared structures

2GEC · Structure of the N-terminal domain of avian infectious bronchitis virus nucleocapsid… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

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Every structure of UniProt P32923
Elsewhere: RCSB PDB 2GEC · PDBe 2GEC · UniProt P32923

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