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Crystal structure of a DUF433 member protein (AVA_0674) from anabaena variabilis atcc 29413 at 2.00 a resolution

Analyse Crystal structure of a DUF433 member protein (AVA_0674) from anabaena… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2GA1
Type: protein
Length: 203 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein of unknown function DUF433
Pockets: 1 · best druggability 0.32

Structure

x-ray diffraction · 2 distinct chains · 64% helix, 5% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein of unknown function DUF433	protein	102	64% helix, 5% strand	—
B	Protein of unknown function DUF433	protein	101	64% helix, 5% strand	—

Ligands and binding sites

GOL · Glycerol · additive · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	81	0.32	0.74	16	empty

Interfaces

1 interface between chains.

A–B · 1273 Å² buried · 5 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 4 modified (engineered).

Compared structures

2GA1 · Crystal structure of a duf433 member protein (ava_0674) from anabaena variabilis atcc… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 2GA1 · PDBe 2GA1

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