Research workbench
The crystal structure of yaeq protein from xanthomonas axonopodis pv. citri
Analyse The crystal structure of yaeq protein from xanthomonas axonopodis pv. citri in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2G3W
- Type
- protein
- Length
- 356 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein XAC2396
- UniProt
- Q8PJY1
- Pockets
- 3 · best druggability 0.68
Structure
x-ray diffraction · 2 distinct chains · 25% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein XAC2396 | protein | 179 | 25% helix, 39% strand | Q8PJY1 |
| B | Hypothetical protein XAC2396 | protein | 177 | 25% helix, 40% strand | Q8PJY1 |
Ligands and binding sites
- ACT · Acetate ion · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 587 | 0.68 | 0.78 | 74 | empty |
| 2 | 130 | 0.45 | 0.77 | 19 | empty |
| 3 | 50 | 0.31 | 0.77 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 728 Ų buried · 7 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 12 modified (engineered).
Compared structures
- 2G3W · The Crystal Structure of YaeQ Protein from Xanthomonas axonopodis pv. citri · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8PJY1
- Elsewhere: RCSB PDB 2G3W · PDBe 2G3W · UniProt Q8PJY1
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