Research workbench
RNA structure containing gu base pairs
Analyse RNA structure containing gu base pairs in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2G3S
- Type
- RNA
- Length
- 80 nucleotides
- Chains
- 10
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-R(*GP*GP*CP*GP*UP*GP*CP*C)-3'
- Ligands
- MG
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H, I, J | 5'-R(*GP*GP*CP*GP*UP*GP*CP*C)-3' | rna | 8 | — | — |
Ligands and binding sites
- MG · Magnesium ion · metal · 2 copies · chains C, I, E, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
16 interfaces between chains.
- G–H · 417 Ų buried · 38 hydrogen bonds · nucleic-nucleic
- I–J · 409 Ų buried · 34 hydrogen bonds · nucleic-nucleic
- C–D · 403 Ų buried · 41 hydrogen bonds · nucleic-nucleic
- A–B · 401 Ų buried · 34 hydrogen bonds · nucleic-nucleic
- E–F · 399 Ų buried · 32 hydrogen bonds · nucleic-nucleic
Compared structures
- 2G3S · RNA structure containing GU base pairs · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2G3S · PDBe 2G3S
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.