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Structure of the N-terminal two domains of the infectivity protein G3P of filamentous phage fd

Analyse Structure of the N-terminal two domains of the infectivity protein G3P of… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2G3P
Type: protein
Length: 402 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Infectivity protein G3P
UniProt: P03661
Pockets: 7 · best druggability 0.78

Structure

x-ray diffraction · 1 distinct chain · 9% helix, 38% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Infectivity protein G3P	protein	201	9% helix, 38% strand	P03661

Pockets

7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	426	0.78	0.87	62	empty
2	167	0.55	0.80	26	empty
3	187	0.52	0.78	31	empty
4	137	0.48	0.78	28	empty
5	83	0.39	0.78	13	empty

Interfaces

1 interface between chains.

A–B · 1502 Å² buried · 11 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 6 disulfide (disulfide).

Compared structures

2G3P · Structure of the N-terminal two domains of the infectivity protein G3P of filamentous… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P03661
Elsewhere: RCSB PDB 2G3P · PDBe 2G3P · UniProt P03661

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