Research workbench
Crystal structure of SMU.848 from streptococcus mutans
Analyse Crystal structure of SMU.848 from streptococcus mutans in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2G0J
- Type
- protein
- Length
- 455 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein SMU.848
- UniProt
- Q8DUQ5
- Pockets
- 7 · best druggability 0.74
Structure
x-ray diffraction · 4 distinct chains · 40% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein SMU.848 | protein | 114 | 41% helix, 26% strand | Q8DUQ5 |
| B | Hypothetical protein SMU.848 | protein | 112 | 38% helix, 29% strand | Q8DUQ5 |
| C | Hypothetical protein SMU.848 | protein | 116 | 41% helix, 28% strand | Q8DUQ5 |
| D | Hypothetical protein SMU.848 | protein | 113 | 38% helix, 27% strand | Q8DUQ5 |
Pockets
7 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 63 | 0.74 | 0.99 | 15 | empty |
| 2 | 56 | 0.73 | 0.98 | 14 | empty |
| 3 | 375 | 0.59 | 0.76 | 34 | empty |
| 4 | 362 | 0.55 | 0.74 | 38 | empty |
| 5 | 229 | 0.52 | 0.76 | 30 | empty |
Interfaces
6 interfaces between chains.
- C–D · 1002 Ų buried · 6 hydrogen bonds · protein-protein
- A–B · 949 Ų buried · 7 hydrogen bonds · protein-protein
- B–C · 334 Ų buried · 4 hydrogen bonds · protein-protein
- A–C · 295 Ų buried · 4 hydrogen bonds · protein-protein
- B–D · 189 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 2G0J · Crystal structure of SMU.848 from Streptococcus mutans · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8DUQ5
- Elsewhere: RCSB PDB 2G0J · PDBe 2G0J · UniProt Q8DUQ5
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