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Structure of C-terminal domain of archaeoglobus fulgidus xpb

Analyse Structure of C-terminal domain of archaeoglobus fulgidus xpb in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2FZL
Type: protein
Length: 197 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: DNA repair protein RAD25, xpb
UniProt: O29889
Pockets: 3 · best druggability 0.44

Structure

x-ray diffraction · 1 distinct chain · 47% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	DNA repair protein RAD25, xpb	protein	197	47% helix, 18% strand	O29889

Ligands and binding sites

IPA · Isopropyl alcohol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	140	0.44	0.76	21	empty
2	82	0.39	0.77	13	IPA
3	54	0.31	0.76	12	empty

Compared structures

2FZL · Structure of C-terminal domain of Archaeoglobus fulgidus XPB · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O29889
Elsewhere: RCSB PDB 2FZL · PDBe 2FZL · UniProt O29889

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