Research workbench
Solution structure of the 2'-5' RNA ligase-like protein from pyrococcus furiosus
Analyse Solution structure of the 2'-5' RNA ligase-like protein from pyrococcus furiosus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2FYH
- Type
- protein
- Length
- 190 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative integral membrane transport protein
- UniProt
- Q8U4Q3
- Pockets
- 3 · best druggability 0.71
Structure
solution nmr · 1 distinct chain · 31% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative integral membrane transport protein | protein | 190 | 31% helix, 36% strand | Q8U4Q3 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 70 | 0.71 | 0.95 | 18 | empty |
| 2 | 196 | 0.48 | 0.75 | 27 | empty |
| 3 | 132 | 0.41 | 0.75 | 18 | empty |
Compared structures
- 2FYH · Solution structure of the 2'-5' RNA ligase-like protein from Pyrococcus furiosus · the same entry in another collection · chain A against A, TM-score 1.00
- Q8U4Q3 · AlphaFold monomer V2.0 prediction for RNA 2',3'-cyclic phosphodiesterase (Q8U4Q3) · a predicted model of the same protein · chain A against A, TM-score 0.87
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8U4Q3
- Elsewhere: RCSB PDB 2FYH · PDBe 2FYH · UniProt Q8U4Q3
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