Research workbench
Structure of strictosidine synthase, the biosynthetic entry to the monoterpenoid indole alkaloid family
Analyse Structure of strictosidine synthase, the biosynthetic entry to the… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2FP8
- Type
- protein
- Length
- 605 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Strictosidine synthase
- EC
- 4.3.3.2
- UniProt
- P68175
- Pockets
- 6 · best druggability 0.71
Structure
x-ray diffraction · 2 distinct chains · 7% helix, 47% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Strictosidine synthase (EC 4.3.3.2) | protein | 302 | 7% helix, 47% strand | P68175 |
| B | Strictosidine synthase (EC 4.3.3.2) | protein | 303 | 7% helix, 48% strand | P68175 |
Pockets
6 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 269 | 0.71 | 0.85 | 32 | empty |
| 2 | 285 | 0.69 | 0.84 | 33 | empty |
| 3 | 206 | 0.58 | 0.81 | 28 | empty |
| 4 | 409 | 0.58 | 0.75 | 46 | empty |
| 5 | 181 | 0.57 | 0.81 | 22 | empty |
Interfaces
1 interface between chains.
- A–B · 617 Ų buried · 10 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 2FP8 · Structure of Strictosidine Synthase, the Biosynthetic Entry to the Monoterpenoid Indole… · the same entry in another collection · chain A against A, TM-score 1.00
- P68175 · AlphaFold monomer V2.0 prediction for strictosidine synthase (P68175) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P68175
- Elsewhere: RCSB PDB 2FP8 · PDBe 2FP8 · UniProt P68175
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