Research workbench
X-ray crystal structure of ferric aplysia limacina myoglobin in different liganded states
Analyse X-ray crystal structure of ferric aplysia limacina myoglobin in different… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2FAL
- Type
- protein
- Length
- 146 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Myoglobin
- UniProt
- P02210
- Ligands
- ACE, HEM, CYN
- Pockets
- 1 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 79% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Myoglobin | protein | 146 | 79% helix, 0% strand | P02210 |
Ligands and binding sites
- ACE · Acetyl group · ligand · chains A
- HEM · Protoporphyrin IX containing Fe · ligand · chains A
- CYN · Cyanide ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 214 | 0.72 | 0.87 | 26 | CYN, HEM |
Modifications
Observed in the structure: 1 covalent (covalent ligand).
Compared structures
- 2FAL · X-ray crystal structure of ferric aplysia limacina myoglobin in different liganded states · the same entry in another collection · chain A against A, TM-score 1.00
- P02210 · AlphaFold monomer V2.0 prediction for globin (P02210) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02210
- Elsewhere: RCSB PDB 2FAL · PDBe 2FAL · UniProt P02210
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.