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Solution NMR structure of domain 5 from the pyaiella littoralis (pl) group II intron

Analyse Solution NMR structure of domain 5 from the pyaiella littoralis (pl) group II… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2F88
Type: RNA
Length: 34 nucleotides
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: D5-pl RNA ribozyme domain
Pockets: 2 · best druggability 0.26

Structure

solution nmr · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	D5-pl RNA ribozyme domain	rna	34	—	—

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	69	0.26	0.72	11	empty
2	57	0.25	0.73	11	empty

Compared structures

2F88 · Solution NMR structure of domain 5 from the Pyaiella littoralis (PL) group II intron · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 2F88 · PDBe 2F88

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