Research workbench
Structural characterization of the UL25 DNA packaging protein from herpes simplex virus type 1
Analyse Structural characterization of the UL25 DNA packaging protein from herpes… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2F5U
- Type
- protein
- Length
- 410 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Virion protein UL25
- UniProt
- P10209
- Pockets
- 8 · best druggability 0.57
Structure
x-ray diffraction · 1 distinct chain · 55% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Virion protein UL25 | protein | 410 | 55% helix, 2% strand | P10209 |
Pockets
8 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 171 | 0.57 | 0.81 | 34 | empty |
| 2 | 101 | 0.51 | 0.82 | 20 | empty |
| 3 | 106 | 0.50 | 0.81 | 17 | empty |
| 4 | 145 | 0.48 | 0.78 | 40 | empty |
| 5 | 90 | 0.44 | 0.80 | 18 | empty |
Compared structures
- 2F5U · Structural Characterization of the UL25 DNA Packaging Protein from Herpes Simplex Virus… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P10209
- Elsewhere: RCSB PDB 2F5U · PDBe 2F5U · UniProt P10209
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.