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Crystal structure of the sugar binding domain of the archaeal transcriptional regulator trmb

Analyse Crystal structure of the sugar binding domain of the archaeal transcriptional… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2F5T
Type: protein
Length: 233 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Archaeal transcriptional regulator trmb
Ligands: GLC
Pockets: 1 · best druggability 0.43

Structure

x-ray diffraction · 1 distinct chain · 27% helix, 40% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
X	Archaeal transcriptional regulator trmb	protein	233	27% helix, 40% strand	—

Ligands and binding sites

GLC · alpha-D-glucopyranose · sugar · 2 copies · chains X
IMD · Imidazole · additive · chains X

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	105	0.43	0.77	18	GLC

Compared structures

2F5T · Crystal Structure of the sugar binding domain of the archaeal transcriptional regulator… · the same entry in another collection · chain X against X, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 2F5T · PDBe 2F5T

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