Research workbench
N-terminal domain of FKBP42 from arabidopsis thaliana
Analyse N-terminal domain of FKBP42 from arabidopsis thaliana in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2F4E
- Type
- protein
- Length
- 258 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- ATFKBP42
- Pockets
- 2 · best druggability 0.50
Structure
x-ray diffraction · 2 distinct chains · 10% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | ATFKBP42 | protein | 131 | 10% helix, 39% strand | — |
| B | ATFKBP42 | protein | 127 | 10% helix, 39% strand | — |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 137 | 0.50 | 0.80 | 19 | empty |
| 2 | 145 | 0.41 | 0.74 | 27 | empty |
Interfaces
1 interface between chains.
- A–B · 722 Ų buried · 11 hydrogen bonds · protein-protein
Compared structures
- 2F4E · N-terminal domain of FKBP42 from Arabidopsis thaliana · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2F4E · PDBe 2F4E
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