Research workbench
Crystal structure of integral membrane protein aquaporin aqpm at 1.68A resolution
Analyse Crystal structure of integral membrane protein aquaporin aqpm at 1.68A… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2F2B
- Type
- protein
- Length
- 245 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Aquaporin aqpm
- UniProt
- Q9C4Z5
- Pockets
- 2 · best druggability 0.61
Structure
x-ray diffraction · 1 distinct chain · 72% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Aquaporin aqpm | protein | 245 | 72% helix, 0% strand | Q9C4Z5 |
Ligands and binding sites
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 206 | 0.61 | 0.82 | 40 | GOL |
| 2 | 122 | 0.51 | 0.80 | 28 | empty |
Compared structures
- 2F2B · Crystal structure of integral membrane protein Aquaporin AqpM at 1.68A resolution · the same entry in another collection · chain A against A, TM-score 1.00
- Q9C4Z5 · AlphaFold monomer V2.0 prediction for aquaporin aqpm (Q9C4Z5) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9C4Z5
- Elsewhere: RCSB PDB 2F2B · PDBe 2F2B · UniProt Q9C4Z5
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