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Structure of cdtb, the biologically active subunit of cytolethal distending toxin

Analyse Structure of cdtb, the biologically active subunit of cytolethal distending… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2F1N
Type: protein
Length: 253 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cytolethal distending toxin subunit B
UniProt: Q46669
Pockets: 1 · best druggability 0.35

Structure

x-ray diffraction · 1 distinct chain · 17% helix, 32% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cytolethal distending toxin subunit B	protein	253	17% helix, 32% strand	Q46669

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	51	0.35	0.79	14	empty

Compared structures

2F1N · Structure of CdtB, the biologically active subunit of Cytolethal Distending Toxin · the same entry in another collection · chain A against A, TM-score 1.00
Q46669 · AlphaFold monomer V2.0 prediction for cytolethal distending toxin subunit B (Q46669) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q46669
Elsewhere: RCSB PDB 2F1N · PDBe 2F1N · UniProt Q46669

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