Research workbench
Solution structure of a complex of the second DNA binding domain of human hmg-I(Y) bound to DNA dodecamer containing the prdii site of the interferon-beta promoter, NMR, minimized average structure
Analyse Solution structure of a complex of the second DNA binding domain of human… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2EZD
- Type
- protein + DNA
- Length
- 45 residues
- Chains
- 3
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*GP*GP*GP*AP*AP*AP*TP*TP*CP*CP*TP*C)-3'); DNA…
- UniProt
- P17096
Structure
solution nmr · 3 distinct chains · 0% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | DNA (5'-D(*GP*GP*GP*AP*AP*AP*TP*TP*CP*CP*TP*C)-3') | dna | 12 | — | — |
| C | DNA (5'-D(*GP*AP*GP*GP*AP*AP*TP*TP*TP*CP*CP*C)-3') | dna | 12 | — | — |
| A | High mobility group protein hmg-I/HMG-Y | protein | 21 | 0% helix, 0% strand | P17096 |
Interfaces
3 interfaces between chains.
- B–C · 567 Ų buried · 42 hydrogen bonds · nucleic-nucleic
- B–A · 526 Ų buried · 6 hydrogen bonds · protein-nucleic
- C–A · 352 Ų buried · 5 hydrogen bonds · protein-nucleic
Compared structures
- 2EZD · Solution structure of a complex of the second DNA binding domain of human hmg-I(Y) bound… · the same entry in another collection · chain B against B, TM-score 1.00
- P17096 · AlphaFold monomer V2.0 prediction for high mobility group protein hmg-I/HMG-Y (P17096) · a predicted model of the same protein · chain A against A, TM-score 0.16
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P17096
- Elsewhere: RCSB PDB 2EZD · PDBe 2EZD · UniProt P17096
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