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Crystal structure of ribonuclease hii (ec 3.1.26.4) (RNase hii) (TM0915) from thermotoga maritima at 1.74 a resolution

Analyse Crystal structure of ribonuclease hii (ec 3.1.26.4) (RNase hii) (TM0915) from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
2ETJ
Type
protein
Length
211 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Ribonuclease hii
EC
3.1.26.4
UniProt
Q9X017
Ligands
MG, CL
Pockets
1 · best druggability 0.37

Structure

x-ray diffraction · 1 distinct chain · 50% helix, 16% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ARibonuclease hii (EC 3.1.26.4)protein21150% helix, 16% strandQ9X017

Ligands and binding sites

  • MG · Magnesium ion · metal · chains A
  • CL · Chloride ion · ion · chains A
  • EDO · 1,2-ethanediol · additive · 5 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
1780.370.7616empty

Modifications

Observed in the structure: 5 modified (engineered).

Compared structures

  • 2ETJ · Crystal structure of Ribonuclease HII (EC 3.1.26.4) (RNase HII) (tm0915) from THERMOTOGA… · the same entry in another collection · chain A against A, TM-score 1.00
  • Q9X017 · AlphaFold monomer V2.0 prediction for ribonuclease hii (Q9X017) · a predicted model of the same protein · chain A against A, TM-score 0.98

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