Research workbench
Crystal structure of a lema protein (TM0961) from thermotoga maritima MSB8 at 2.28 a resolution
Analyse Crystal structure of a lema protein (TM0961) from thermotoga maritima MSB8 at… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2ETD
- Type
- protein
- Length
- 141 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lema protein
- UniProt
- Q9X056
- Ligands
- CL
- Pockets
- 1 · best druggability 0.28
Structure
x-ray diffraction · 1 distinct chain · 82% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lema protein | protein | 141 | 82% helix, 0% strand | Q9X056 |
Ligands and binding sites
- CL · Chloride ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 57 | 0.28 | 0.74 | 15 | CL |
Modifications
Observed in the structure: 13 modified (methylation, engineered).
Compared structures
- 2ETD · Crystal structure of a lema protein (tm0961) from thermotoga maritima msb8 at 2.28 A… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9X056
- Elsewhere: RCSB PDB 2ETD · PDBe 2ETD · UniProt Q9X056
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