Research workbench
Structure of the SAM domain of VTS1P in complex with RNA
Analyse Structure of the SAM domain of VTS1P in complex with RNA in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2ESE
- Type
- protein + RNA
- Length
- 104 residues
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-R(*GP*GP*AP*GP*AP*GP*GP*CP*UP*CP*UP*GP*GP*CP*AP*GP*CP*UP *UP*UP*UP*CP*C)-3'; VTS1P
- Pockets
- 1 · best druggability 0.50
Structure
solution nmr · 2 distinct chains · 57% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | 5'-R(*GP*GP*AP*GP*AP*GP*GP*CP*UP*CP*UP*GP*GP*CP*AP*GP*CP*UP *UP*UP*UP*CP*C)-3' | rna | 23 | — | — |
| A | VTS1P | protein | 81 | 57% helix, 0% strand | — |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 261 | 0.50 | 0.75 | 20 | empty |
Interfaces
1 interface between chains.
- B–A · 532 Ų buried · 18 hydrogen bonds · protein-nucleic
Compared structures
- 2ESE · Structure of the SAM domain of Vts1p in complex with RNA · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2ESE · PDBe 2ESE
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