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Crystallization and X-ray structure determination of cytochrome C2 from rhodobacter sphaeroides in three crystal forms

Analyse Crystallization and X-ray structure determination of cytochrome C2 from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
1CXC
Type
protein
Length
124 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Cytochrome C2
UniProt
P00095
Ligands
HEC
Pockets
1 · best druggability 0.76

Structure

x-ray diffraction · 1 distinct chain · 43% helix, 6% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ACytochrome C2protein12443% helix, 6% strandP00095

Ligands and binding sites

  • HEC · Heme C · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
12180.760.9036HEC

Modifications

Observed in the structure: 2 cofactor (heme c attachment).

Compared structures

  • 1CXC · Crystallization and X-ray structure determination of cytochrome C2 from rhodobacter… · the same entry in another collection · chain A against A, TM-score 1.00

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