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Solution structure of the arid domain of JARID1B protein

Analyse Solution structure of the arid domain of JARID1B protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2EQY
Type: protein
Length: 122 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Jumonji, at rich interactive domain 1B
UniProt: Q80Y84
Pockets: 1 · best druggability 0.30

Structure

solution nmr · 1 distinct chain · 52% helix, 2% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Jumonji, at rich interactive domain 1B	protein	122	52% helix, 2% strand	Q80Y84

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	54	0.30	0.76	10	empty

Compared structures

2EQY · Solution structure of the ARID domain of Jarid1b protein · the same entry in another collection · chain A against A, TM-score 1.00
Q80Y84 · AlphaFold monomer V2.0 prediction for lysine-specific demethylase 5B (Q80Y84) · a predicted model of the same protein · chain A against A, TM-score 0.70

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Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q80Y84
Elsewhere: RCSB PDB 2EQY · PDBe 2EQY · UniProt Q80Y84

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