Research workbench
Hypothetical conserved protein (GK1048) from geobacillus kaustophilus
Analyse Hypothetical conserved protein (GK1048) from geobacillus kaustophilus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2EMQ
- Type
- protein
- Length
- 268 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical conserved protein
- UniProt
- Q5L147
- Pockets
- 3 · best druggability 0.69
Structure
x-ray diffraction · 2 distinct chains · 35% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical conserved protein | protein | 135 | 36% helix, 26% strand | Q5L147 |
| B | Hypothetical conserved protein | protein | 133 | 35% helix, 26% strand | Q5L147 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 567 | 0.69 | 0.78 | 52 | empty |
| 2 | 85 | 0.42 | 0.78 | 15 | empty |
| 3 | 74 | 0.35 | 0.75 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 1327 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 2EMQ · Hypothetical Conserved Protein (GK1048) from Geobacillus Kaustophilus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5L147
- Elsewhere: RCSB PDB 2EMQ · PDBe 2EMQ · UniProt Q5L147
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