Research workbench
Crystal structure of pantoate--beta-alanine ligase (panc) from thermotoga maritima
Analyse Crystal structure of pantoate--beta-alanine ligase (panc) from thermotoga… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2EJC
- Type
- protein
- Length
- 280 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pantoate--beta-alanine ligase
- EC
- 6.3.2.1
- UniProt
- Q9X0G6
- Ligands
- ZN
- Pockets
- 3 · best druggability 0.83
Structure
x-ray diffraction · 1 distinct chain · 44% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pantoate--beta-alanine ligase (EC 6.3.2.1) | protein | 280 | 44% helix, 22% strand | Q9X0G6 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 682 | 0.83 | 0.87 | 79 | ZN |
| 2 | 60 | 0.38 | 0.79 | 16 | empty |
| 3 | 62 | 0.30 | 0.74 | 17 | empty |
Compared structures
- 2EJC · Crystal Structure Of Pantoate--Beta-Alanine Ligase (panC) From Thermotoga maritima · the same entry in another collection · chain A against A, TM-score 1.00
- Q9X0G6 · AlphaFold monomer V2.0 prediction for pantothenate synthetase (Q9X0G6) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9X0G6
- Elsewhere: RCSB PDB 2EJC · PDBe 2EJC · UniProt Q9X0G6
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.