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X-ray crystal structure of equine infectious anemia virus (eiav) capsid protein P26

Analyse X-ray crystal structure of equine infectious anemia virus (eiav) capsid protein… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2EIA
Type: protein
Length: 410 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Eiav capsid protein P26
UniProt: P69732
Pockets: 3 · best druggability 0.68

Structure

x-ray diffraction · 2 distinct chains · 57% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Eiav capsid protein P26	protein	206	55% helix, 0% strand	P69732
B	Eiav capsid protein P26	protein	204	59% helix, 0% strand	P69732

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	488	0.68	0.79	47	empty
2	362	0.58	0.75	41	empty
3	184	0.44	0.74	24	empty

Interfaces

1 interface between chains.

A–B · 1088 Å² buried · 18 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

2EIA · X-ray crystal structure of equine infectious anemia virus (eiav) capsid protein P26 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P69732
Elsewhere: RCSB PDB 2EIA · PDBe 2EIA · UniProt P69732

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