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Solution structure of the fifth fibronectin type III domain of human netrin receptor dcc

Analyse Solution structure of the fifth fibronectin type III domain of human netrin… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2EDD
Type: protein
Length: 123 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Netrin receptor dcc
UniProt: P43146
Pockets: 1 · best druggability 0.28

Structure

solution nmr · 1 distinct chain · 0% helix, 35% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Netrin receptor dcc	protein	123	0% helix, 35% strand	P43146

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	50	0.28	0.75	11	empty

Compared structures

2EDD · Solution structure of the fifth fibronectin type III domain of human Netrin receptor DCC · the same entry in another collection · chain A against A, TM-score 1.00
P43146 · AlphaFold monomer V2.0 prediction for netrin receptor dcc (P43146) · a predicted model of the same protein · chain A against A, TM-score 0.76

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P43146
Elsewhere: RCSB PDB 2EDD · PDBe 2EDD · UniProt P43146

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