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Solution structure of the zinc finger, C3HC4 type (ring finger) domain of tripartite motif-containing protein 5

Analyse Solution structure of the zinc finger, C3HC4 type (ring finger) domain of… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2ECV
Type: protein
Length: 85 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Tripartite motif-containing protein 5
EC: 6.3.2.-
UniProt: Q9C035
Ligands: ZN
Pockets: 1 · best druggability 0.30

Structure

solution nmr · 1 distinct chain · 13% helix, 2% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Tripartite motif-containing protein 5 (EC 6.3.2.-)	protein	85	13% helix, 2% strand	Q9C035

Ligands and binding sites

ZN · Zinc ion · metal · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	51	0.30	0.76	11	empty

Compared structures

2ECV · Solution structure of the Zinc finger, C3HC4 type (RING finger) domain of Tripartite… · the same entry in another collection · chain A against A, TM-score 1.00
Q9C035 · AlphaFold monomer V2.0 prediction for tripartite motif-containing protein 5 (Q9C035) · a predicted model of the same protein · chain A against A, TM-score 0.62

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9C035
Elsewhere: RCSB PDB 2ECV · PDBe 2ECV · UniProt Q9C035

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