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Crystal structure of a neat domain from staphylococcus aureus

Analyse Crystal structure of a neat domain from staphylococcus aureus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2E7D
Type: protein
Length: 228 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hypothetical protein isdh
UniProt: Q931P4
Ligands: SO4

Structure

x-ray diffraction · 2 distinct chains · 11% helix, 60% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Hypothetical protein isdh	protein	116	9% helix, 59% strand	Q931P4
B	Hypothetical protein isdh	protein	112	13% helix, 60% strand	Q931P4

Ligands and binding sites

SO4 · Sulfate ion · ion · 3 copies · chains A, B
GOL · Glycerol · additive · 2 copies · chains A, B
ACT · Acetate ion · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 564 Å² buried · 13 hydrogen bonds · protein-protein

Compared structures

2E7D · Crystal structure of a NEAT domain from Staphylococcus aureus · the same entry in another collection · chain A against A, TM-score 1.00
Q931P4 · AlphaFold monomer V2.0 prediction for iron-regulated surface determinant protein H… · a predicted model of the same protein · chain B against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q931P4
Elsewhere: RCSB PDB 2E7D · PDBe 2E7D · UniProt Q931P4

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