Research workbench
TNF receptor subtype one-selective TNF mutant with antagonistic activity
Analyse TNF receptor subtype one-selective TNF mutant with antagonistic activity in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2E7A
- Type
- protein
- Length
- 435 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tumor necrosis factor
- UniProt
- P01375
- Pockets
- 5 · best druggability 0.73
Structure
x-ray diffraction · 3 distinct chains · 2% helix, 53% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tumor necrosis factor | protein | 150 | 4% helix, 49% strand | P01375 |
| B | Tumor necrosis factor | protein | 142 | 2% helix, 54% strand | P01375 |
| C | Tumor necrosis factor | protein | 143 | 0% helix, 55% strand | P01375 |
Pockets
5 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 52 | 0.73 | 1.00 | 15 | empty |
| 2 | 327 | 0.72 | 0.85 | 41 | empty |
| 3 | 68 | 0.58 | 0.89 | 20 | empty |
| 4 | 67 | 0.50 | 0.85 | 20 | empty |
| 5 | 81 | 0.50 | 0.83 | 20 | empty |
Interfaces
3 interfaces between chains.
- B–C · 1142 Ų buried · 14 hydrogen bonds · protein-protein
- A–C · 1137 Ų buried · 13 hydrogen bonds · protein-protein
- A–B · 1006 Ų buried · 12 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 3 disulfide (disulfide).
Compared structures
- 2E7A · TNF Receptor Subtype One-selective TNF Mutant with Antagonistic Activity · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P01375
- Elsewhere: RCSB PDB 2E7A · PDBe 2E7A · UniProt P01375
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