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The crystal structure of saccharomyces cerevisiae ATG3

Analyse The crystal structure of saccharomyces cerevisiae ATG3 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2DYT
Type: protein
Length: 213 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Autophagy-related protein 3
UniProt: P40344
Ligands: SO4
Pockets: 2 · best druggability 0.48

Structure

x-ray diffraction · 1 distinct chain · 38% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Autophagy-related protein 3	protein	213	38% helix, 21% strand	P40344

Ligands and binding sites

SO4 · Sulfate ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	96	0.48	0.81	18	SO4
2	53	0.34	0.78	20	empty

Compared structures

2DYT · The crystal structure of Saccharomyces cerevisiae Atg3 · the same entry in another collection · chain A against A, TM-score 1.00
P40344 · AlphaFold monomer V2.0 prediction for autophagy-related protein 3 (P40344) · a predicted model of the same protein · chain A against A, TM-score 0.88

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P40344
Elsewhere: RCSB PDB 2DYT · PDBe 2DYT · UniProt P40344

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