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Crystal structure of trans editing enzyme prox from E.COLI

Analyse Crystal structure of trans editing enzyme prox from E.COLI in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2DXA
Type: protein
Length: 158 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein ybak
UniProt: P0AAR3
Ligands: CL
Pockets: 1 · best druggability 0.63

Structure

x-ray diffraction · 1 distinct chain · 27% helix, 32% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein ybak	protein	158	27% helix, 32% strand	P0AAR3

Ligands and binding sites

CL · Chloride ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	166	0.63	0.85	25	empty

Modifications

Observed in the structure: 4 modified (engineered).

Compared structures

2DXA · Crystal structure of trans editing enzyme ProX from E.coli · the same entry in another collection · chain A against A, TM-score 1.00
P0AAR3 · AlphaFold monomer V2.0 prediction for cys-TRNA(PRO)/CYS-TRNA(CYS) deacylase ybak (P0AAR3) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0AAR3
Elsewhere: RCSB PDB 2DXA · PDBe 2DXA · UniProt P0AAR3

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