Research workbench
Thermus thermophilus ychf GTP-binding protein
Analyse Thermus thermophilus ychf GTP-binding protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2DWQ
- Type
- protein
- Length
- 691 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- GTP-binding protein
- UniProt
- Q5SJ29
- Pockets
- 11 · best druggability 0.67
Structure
x-ray diffraction · 2 distinct chains · 46% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | GTP-binding protein | protein | 354 | 46% helix, 20% strand | Q5SJ29 |
| B | GTP-binding protein | protein | 337 | 46% helix, 19% strand | Q5SJ29 |
Pockets
11 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 591 | 0.67 | 0.77 | 57 | empty |
| 2 | 475 | 0.64 | 0.77 | 46 | empty |
| 3 | 246 | 0.54 | 0.77 | 26 | empty |
| 4 | 129 | 0.51 | 0.81 | 23 | empty |
| 5 | 64 | 0.45 | 0.82 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 1112 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 2DWQ · Thermus thermophilus YchF GTP-binding protein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5SJ29
- Elsewhere: RCSB PDB 2DWQ · PDBe 2DWQ · UniProt Q5SJ29
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