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Crystal structure of hypothetical protein, PH0823

Analyse Crystal structure of hypothetical protein, PH0823 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2DUM
Type: protein
Length: 569 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hypothetical protein PH0823
UniProt: O58553
Pockets: 6 · best druggability 0.59

Structure

x-ray diffraction · 4 distinct chains · 42% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Hypothetical protein PH0823	protein	143	41% helix, 22% strand	O58553
B	Hypothetical protein PH0823	protein	139	45% helix, 25% strand	O58553
C	Hypothetical protein PH0823	protein	146	41% helix, 22% strand	O58553
D	Hypothetical protein PH0823	protein	141	43% helix, 26% strand	O58553

Pockets

6 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	214	0.59	0.80	36	empty
2	190	0.57	0.80	29	empty
3	147	0.56	0.82	25	empty
4	157	0.55	0.81	29	empty
5	63	0.34	0.77	20	empty

Interfaces

2 interfaces between chains.

B–C · 1476 Å² buried · 18 hydrogen bonds · protein-protein
A–D · 1422 Å² buried · 21 hydrogen bonds · protein-protein

Compared structures

2DUM · Crystal structure of hypothetical protein, PH0823 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O58553
Elsewhere: RCSB PDB 2DUM · PDBe 2DUM · UniProt O58553

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