Research workbench
Crystal structure of the circadian clock associated protein pex from anabaena
Analyse Crystal structure of the circadian clock associated protein pex from anabaena in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2DQL
- Type
- protein
- Length
- 230 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pex protein
- UniProt
- Q8YQ56
- Ligands
- PO4
- Pockets
- 2 · best druggability 0.31
Structure
x-ray diffraction · 1 distinct chain · 57% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Pex protein | protein | 115 | 57% helix, 15% strand | Q8YQ56 |
Ligands and binding sites
- PO4 · Phosphate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 84 | 0.31 | 0.72 | 11 | empty |
| 2 | 65 | 0.30 | 0.74 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 1024 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 2DQL · Crystal structure of the circadian clock associated protein Pex from anabaena · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8YQ56
- Elsewhere: RCSB PDB 2DQL · PDBe 2DQL · UniProt Q8YQ56
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