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Crystal structure of PH1978 from pyrococcus horikoshii OT3 (form II)

Analyse Crystal structure of PH1978 from pyrococcus horikoshii OT3 (form II) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2DMA
Type: protein
Length: 118 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: V-type ATP synthase subunit E
EC: 3.6.3.14
UniProt: O57724
Pockets: 1 · best druggability 0.41

Structure

x-ray diffraction · 1 distinct chain · 60% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	V-type ATP synthase subunit E (EC 3.6.3.14)	protein	118	60% helix, 17% strand	O57724

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	125	0.41	0.74	15	empty

Modifications

Observed in the structure: 4 modified (engineered).

Compared structures

2DMA · Crystal Structure of PH1978 from Pyrococcus horikoshii OT3 (form II) · the same entry in another collection · chain A against A, TM-score 1.00
O57724 · AlphaFold monomer V2.0 prediction for V-type ATP synthase subunit E (O57724) · a predicted model of the same protein · chain A against A, TM-score 0.87

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O57724
Elsewhere: RCSB PDB 2DMA · PDBe 2DMA · UniProt O57724

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