Research workbench
Solution structure of the B-box domain of the human midline-2 protein
Analyse Solution structure of the B-box domain of the human midline-2 protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2DJA
- Type
- protein
- Length
- 84 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Midline-2
- UniProt
- Q9UJV3
- Ligands
- ZN
- Pockets
- 1 · best druggability 0.26
Structure
solution nmr · 1 distinct chain · 6% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Midline-2 | protein | 84 | 6% helix, 8% strand | Q9UJV3 |
Ligands and binding sites
- ZN · Zinc ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 60 | 0.26 | 0.72 | 11 | empty |
Compared structures
- 2DJA · Solution structure of the B-box domain of the human Midline-2 protein · the same entry in another collection · chain A against A, TM-score 1.00
- Q9UJV3 · AlphaFold monomer V2.0 prediction for probable E3 ubiquitin-protein ligase MID2 (Q9UJV3) · a predicted model of the same protein · chain A against A, TM-score 0.49
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9UJV3
- Elsewhere: RCSB PDB 2DJA · PDBe 2DJA · UniProt Q9UJV3
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