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Crystal structure of 6-pyruvoyl tetrahydrobiopterin synthase from pyrococcus horikoshii OT3

Analyse Crystal structure of 6-pyruvoyl tetrahydrobiopterin synthase from pyrococcus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2DJ6
Type: protein
Length: 325 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hypothetical protein PH0634
EC: 4.2.3.12
Pockets: 2 · best druggability 0.74

Structure

x-ray diffraction · 3 distinct chains · 28% helix, 40% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Hypothetical protein PH0634 (EC 4.2.3.12)	protein	105	30% helix, 39% strand	—
B	Hypothetical protein PH0634 (EC 4.2.3.12)	protein	115	27% helix, 39% strand	—
C	Hypothetical protein PH0634 (EC 4.2.3.12)	protein	105	27% helix, 42% strand	—

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	450	0.74	0.83	46	empty
2	155	0.52	0.80	21	empty

Interfaces

3 interfaces between chains.

A–B · 810 Å² buried · 18 hydrogen bonds · protein-protein
A–C · 757 Å² buried · 19 hydrogen bonds · protein-protein
B–C · 751 Å² buried · 18 hydrogen bonds · protein-protein

Compared structures

2DJ6 · Crystal structure of 6-pyruvoyl tetrahydrobiopterin synthase from Pyrococcus horikoshii… · the same entry in another collection · chain A against A, TM-score 1.00

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Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 2DJ6 · PDBe 2DJ6

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